Guest Cryptococcus (guest_cryptococcus) |



Welcome to the Cryptococcus neoformans Phenome Gateway! 

Search a Gene  SEARCH

Provide locus/gene name (e.g. CNAG_02566 / FKH2) or part of it.

Browse by Gene Family

TFsBrowse TFs

 KinasesBrowse kinases

 PhosphatasesBrowse phosphatases

Browse TF Genes

A total of 178 sequence-specific DNA-binding transcription factors in serotype A Cryptococcus neoformans var. grubii predicted by the DNA-Binding Domain (DBD) database (Wilson et al., 2008) are archived in the database. The results from 9 bioinformatics programs and RNA-seq data are available for each TF gene. In addition, data for more than 30 in vitro and in vivo phenotypic traits for 155 TFs are available.

Browse Kinase Genes

A total of 207 kinases in serotype A C. neoformans var. grubii predicted by the Superfamily are archived in the database. The results from 9 bioinformatics programs and RNA-seq data are available for each kinase gene. In addition, data for more than 30 in vitro and in vivo phenotypic traits for 183 kinases are available.

Phenome Database Summary

# TF Genes   More
 208 genes (30 isoforms inclusive)
 155 genes have phenotype data.
# Kinase Genes   More
 239 genes (32 isoforms inclusive)
 183 genes have phenotype data.
# Phosphatase Genes   More
 158 genes (19 isoforms inclusive)
 114 genes have phenotype data.


Browse Phosphatase Genes

A total of 139 phosphatases in serotype A C. neoformans var. grubii are archived in the database. The results from 9 bioinformatics programs and RNA-seq data are available for each phosphatase gene. In addition, data for more than 30 in vitro and in vivo phenotypic traits for 114 phosphatases are available.

BLAST against C. neoformans Genome

You can BLAST your sequences against C. neoformans genome/proteome, which is available at HERE.