Kinase Browser
Detailed locus information, expression profile, gene disruption strategy, and phenotype assay data.
Detailed Locus Information for CNAG_06642T0
| Species | Cryptococcus neoformans var. grubii H99 | ||||||||||||||||||
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| Gene Annotation | Atypical/PIKK/FRAP protein kinase | ||||||||||||||||||
| Gene Symbol | Unknown | ||||||||||||||||||
| Kinase Superfamily | Protein kinase-like (PK-like) | ||||||||||||||||||
| Kinase Family | Phoshoinositide 3-kinase (PI3K), catalytic domain | ||||||||||||||||||
| KEGG Linkout | KEGG::CNF03740 | ||||||||||||||||||
| Genome Browser | JBrowse link goes here. Sequence information also available from JBrowse. | ||||||||||||||||||
| Kinase Prediction |
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| Functional Annotation |
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| Amino Acid Sequence | MSSQSDVLDNIFQRLSARSEDVRAQAGQDLAEHVVAYTQEYPGHDASKGVWAQVFHKTFEFTRSNNQLERLGAIIAISQLLQLTKDDTPDRAQQKVLRLYEYLRPLTTCGDSTVMLPASLVVEDMVRNSPTLHTDTFLGKEVGQALVMIDDSRQEVGRFSGALLLYAFARAAPGVFHQYISKVLEKIWIPLRDSRSVVRERASMLLSTCLDTLKTRGDRPSTDTYRKIFEEARLGLLKASSTESILGSLLAFNSMLQNQQLSMAEYYRSICELTFKYRDSKEVSIRKAVIALIPSMATYDSDDFEAHYLHRGMAYLLQALNRPADRDISYVALGHMAVHLGSKMKPFIDDIMRIIRDHLRMRGKKNAPYEAPIFQCLAMLATSVGPMLTRQMHEILDLMFPWGLSEPLCTALQATASHIPPLLRTIQDRLLEMLSQTLTGQSYRPLGAPAPRGGAQMDLNLLQSTTNAQSTDTLKLALRLLARFDFVGHTLSEFVRDAALPYLEHDSVEVRREAVLATTTLFMTDPICQQTSSNSVEIVNDVLSKLLTVAITDPNAGIRRTVLDHLEDKFDRHLAQAADIRCLFIALNDEVFGNRERTISIIGRLAHHNPAYVMPHLRKSLINIVTELEYSTNARQKEESAKLLCLMIGAAAGLVKSYAPTILSVLLRTASSPESSIGVQAECLKCIGELARVAGEELVPSVRAILDLVIEMLNDQSSPAKRDTALKTLGQIASNTGEVIKPYTDYPQLMGVLFRFLRMEANSSVRQETIKTIGMLGALDPFKHKTLLGDVDDPIDEGTTSRVNDIVLLNQHNSSVNDEFFQTVVIHSLVNVLHDSTYKDHYQAVEAIMMIFRTQRLRCVNFLPQIVPAFLNVIRIAHSSRTELYLKQLAQFITIVKLHIRNYLNDVFDLIHEFWNPNSTLQITIISLVEAIAKAVEGEFKAYLPKLLQQILRSFDGDLSAKHLPELKLNTLLQILKAFYVFGESIEDYLHLVLPVIVRSFENPAAPDSLRIAALRTTGQLCRKVNFSDHASQIIHPLVRTLGNSSEELRQTAMETLCVLVLQFGPDYAIFIPMVNKALVENKISHPGYEALITKLLNRERLPPDLGPVERYASDSAAEASAPEPVALKVNQQALKLAWDCSHLLNTSSRTEWISWIIGLGHEMMRESPSQAIRAARSLALSSVAFTKELFNVAFYSCWQELFESYQEDLWHNLDRAIKKDDVPGDVVNMILGATQFLEHDEKEVAIESRVLGSVAANYQALAVALHYKEQEFFLDPSKEVIEDLIDVNQKLQQSDAAWGTLEWAQTEMGMTTEVEWYEKLGRWEEALQVWNERDADASTTFSEWEITEGKVTCLHAMGEWEQLSDFVQARWANRTAEEKKLLSPLAAAASWSLKQWDLMDDYISAMKGDGADRAFFKAILAVHRNQIPAALKQISKARERLDPELTTLTGDSYGRAYDTVVRIQMLAELEEIIAYKDHADEPARQEMQRQTWKKRLAGCQRDVEVWQRILQVRSLVLKPNEDMDTWIEFADLCRTSDRLNLAEKTLTSLVGFQYPSMEDTRGRAPPPIIFAYLRMAWAKNLQIDSREERYETLQHLRDFTDQLTDDVGIGARGPNGRLMLPDQKLYGSYTKLLAQCHVELGQWQATLRESQGSADPSGILHDYCLATELDPEWYQAWHTWALANFEVITQLEVSQQGLSPVHFTTYIIPAVEGFLKSISLSPGNSLQDTLRLLTLWFTYGYSSGVTAAVSQGLPTVNIDVWLEVIPQIIARIQTPRQSIQQLIVQLLHDIGKAHPQALIYPLTVASKSTVAARRTVAQNITHKMREHSPKIVDQAELVSTELIRAAILWHEMWYDGLEEASKHYFGDHDIPGMLGVLEPLHEIVENGPQTLRETSFIQSFGHDLRIAREHLKRYRITQDGTEIQQAWDVYYSVFQRLGKQLKLLNVIELQYVSPKLMAVRDLDIAVPGTYQSGKPIIGIKNVIPTFKVIASKQKPRQCSMRGMDGKEYAYCLKGHEDLRQDERVMQLFGLVNTLLNNDHESAKRHLSIQRFSVTPLSPSAGLLGWVTHSDTIHVLIKQYRDQRKILVDIEHKLMQQMSDESYDSLPLLHKVEIFQYALDNTTGQDLYRILWLKSRNSDIWLERRTTYTRSLGLNSMVGYILGLGDRHPSNLLLDQITGKMVHIDFGDCFEVAQQRDKYPEKVPFRLTRMLIHAMEVCGITGNFSRSCEVSMEVLRDNRESLMAVLEAFVYDPLIAWRLTATDKRPGGVGEVKDLDDPAVYGKQRKNKANETEILNDVENTEVKNDKGLQVIERVRRKLTGRDFKPDVVLDVKSQVEKLVVEATKTENLCVAFLGWCSFW | ||||||||||||||||||
Expression Data
| Notation | Condition | Normalized Raw Expression |
|---|---|---|
| A | YPD 30°C, concentration: 2x 10^8 cells/ml | 27566 |
| B | YPD 30°C, concentration: 5x10^7 cells/ml | 18025 |
| C | YPD 30°C, fluconazole treatment, concentration: 5x10^7 cells/ml | 20143 |
| D | YPD 30°C, SDS 0.01% treatment, concentration: 5x10^7 cells/ml | 13160 |
| E | YPD 37°C, concentration: 5x10^7 cells/ml | 13013 |
| F | YP+galactose 30°C, concentration: 2x10^8 cells/ml | 18823 |
Gene Disruption Strategy
| Primer Name | Description | Primer Sequence |
|---|---|---|
| L1 | CNAG_06642 5' flanking region primer 1 | CCTTTTCCTTTTACCTGGC |
| L2 | CNAG_06642 5' flanking region primer 2 | TCACTGGCCGTCGTTTTACCGCTGAAAGATGTTGTCG |
| R1 | CNAG_06642 3' flanking region primer 1 | CATGGTCATAGCTGTTTCCTGTGGATTGACTGGACGAAAC |
| R2 | CNAG_06642 3' flanking region primer 2 | CTGGTATGCGTAAAGACTTGAC |
| SO | CNAG_06642 diagnostic screening primer, pairing with B79 | CCTGCTGAACGGATGATAG |
| PO | CNAG_06642 Southern blot probe primer | GAAGGTTAGTTCGCAAATGG |
| STM | NAT#43 STM primer | CCAGCTACCAATCACGCTAC |
| STM common | STM common primer | GCATGCCCTGCCCCTAAGAATTCG |
